Supplemental Materials

    On estimating the proportion of true null hypotheses for false discovery rate
    controlling procedures in exploratory DNA microarray studies


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Supplemental Results (Posted 12/18/03 20:15 PST)

I. MAIN CASES: Files 1, 2, and 3 contain both (a) equal and (b) unequal group sample sizes for the normal, gamma, lognormal model, and dependent data. All files are in PDF format.
  1. P-values based on t-statistics with pooled variance [Estimate of Pi0]   [Power]  
  2. P-values based on permutation [Estimate of Pi0]   [Power]  
  3. P-values based on a Welch correction to DF for unequal variance [Estimate of Pi0]   [Power]  

II. SPECIAL/ADDITIONAL CASES: (a) equal and (b) unequal sample sizes
  4. Contant variance, fixed alternative mean: case (A)
     (a) [Estimate of Pi0]   [Power]   (b) [Estimate of Pi0]   [Power]  
  5. Contant variance, mixed alternative means: case (B)
     (a) [Estimate of Pi0]   [Power]   (b) [Estimate of Pi0]   [Power]  
  6. Smaller effect size: case (A)
     (a) [Estimate of Pi0]   [Power]   (b) [Estimate of Pi0]   [Power]  
  7. Larger effect size: case (B)
     (a) [Estimate of Pi0]   [Power]   (b) [Estimate of Pi0]   [Power]  
  8. Mixed null variances
     (a) [Estimate of Pi0]   [Power]   (b) [Estimate of Pi0]   [Power]  
  9. Main case, m = 3000
     (a) [Estimate of Pi0]   [Power]   (b) [Estimate of Pi0]   [Power]